KodDNA|Eminent Biosciences Products|ORF Finder(Open Reading Frame)|Anuraj Nayarisseri|The Best tool|

ORF Finder(Open Reading Frame)

Format Conversion

EMBL2FASTA

EMBLFeatureExtrct

INPUT GENE/PROTEIN SEQUENCE OF YOUR INTEREST

>test
gtaccttgatttcgtattctgagaggctgctgcttagcggtagccccttggtttccgtgg
caacggaaaagcgcgggaattacagataaattaaaactgcgactgcgcggcgtgagctcg
ctgagacttcctggacgggggacaggctgtggggtttctcagataactgggcccctgcgc
tcaggaggccttcaccctctgctctgggtaaagttcattggaacagaaagaaatggattt
atctgctcttcgcgttgaagaagtacaaaatgtcattaatgctatgcagaaaatcttaga
gtgtcccatctgtctggagttgatcaaggaacctgtctccacaaagtgtgaccacatatt
ttgcaaattttgcatgctgaaacttctcaaccagaagaaagggccttcacagtgtccttt
atgtaagaatgatataaccaaaaggagcctacaagaaagtacgagatttagtcaacttgt
tgaagagctattgaaaatcatttgtgcttttcagcttgacacaggtttggagtatgcaaa
cagctataattttgcaaaaaaggaaaataactctcctgaacatctaaaagatgaagtttc
tatcatccaaagtatgggctacagaaaccgtgccaaaagacttctacagagtgaacccga
aaatccttccttgcaggaaaccagtctcagtgtccaactctctaaccttggaactgtgag
aactctgaggacaaagcagcggatacaacctcaaaagacgtctgtctacattgaattggg
atctgattcttctgaagataccgttaataaggcaacttattgcagtgtgggagatcaaga
attgttacaaatcacccctcaaggaaccagggatgaaatcagtttggattctgcaaaaaa
ggctgcttgtgaattttctgagacggatgtaacaaatactgaacatcatcaacccagtaa
taatgatttgaacaccactgagaagcgtgcagctgagaggcatccagaaaagtatcaggg
tagttctgtttcaaacttgcatgtggagccatgtggcacaaatactcatgccagctcatt
acagcatgagaacagcagtttattactcactaaagacagaatgaatgtagaaaaggctga
attctgtaataaaagcaaacagcctggcttagcaaggagccaacataacagatgggctgg
aagtaaggaaacatgtaatgataggcggactcccagcacagaaaaaaaggtagatctgaa
tgctgatcccctgtgtgagagaaaagaatggaataagcagaaactgccatgctcagagaa
tcctagagatactgaagatgttccttggataacactaaatagcagcattcagaaagttaa
tgagtggttttccagaagtgatgaactgttaggttctgatgactcacatgatggggagtc
tgaatcaaatgccaaagtagctgatgtattggacgttctaaatgaggtagatgaatattc
tggttcttcagagaaaatagacttactggccagtgatcctcatgaggctttaatatgtaa
aagtgaaagagttcactccaaatcagtagagagtaatattgaagacaaaatatttgggaa
aacctatcggaagaaggcaagcctccccaacttaagccatgtaactgaaaatctaattat
aggagcatttgttactgagccacagataatacaagagcgtcccctcacaaataaattaaa
gcgtaaaaggagacctacatcaggccttcatcctgaggattttatcaagaaagcagattt
ggcagttcaaaagactcctgaaatgataaatcagggaactaaccaaacggagcagaatgg
tcaagtgatgaatattactaatagtggtcatgagaataaaacaaaaggtgattctattca
gaatgagaaaaatcctaacccaatagaatcactcgaaaaagaatctgctttcaaaacgaa
agctgaacctataagcagcagtataagcaatatggaactcgaattaaatatccacaattc
aaaagcacctaaaaagaataggctgaggaggaagtcttctaccaggcatattcatgcgct
tgaactagtagtcagtagaaatctaagcccacctaattgtactgaattgcaaattgatag
ttgttctagcagtgaagagataaagaaaaaaaagtacaaccaaatgccagtcaggcacag
cagaaacctacaactcatggaaggtaaagaacctgcaactggagccaagaagagtaacaa
gccaaatgaacagacaagtaaaagacatgacagcgatactttcccagagctgaagttaac
aaatgcacctggttcttttactaagtgttcaaataccagtgaacttaaagaatttgtcaa
tcctagccttccaagagaagaaaaagaagagaaactagaaacagttaaagtgtctaataa
tgctgaagaccccaaagatctcatgttaagtggagaaagggttttgcaaactgaaagatc
tgtagagagtagcagtatttcattggtacctggtactgattatggcactcaggaaagtat
ctcgttactggaagttagcactctagggaaggcaaaaacagaaccaaataaatgtgtgag
tcagtgtgcagcatttgaaaaccccaagggactaattcatggttgttccaaagataatag
aaatgacacagaaggctttaagtatccattgggacatgaagttaaccacagtcgggaaac
aagcatagaaatggaagaaagtgaacttgatgctcagtatttgcagaatacattcaaggt
ttcaaagcgccagtcatttgctccgttttcaaatccaggaaatgcagaagaggaatgtgc
aacattctctgcccactctgggtccttaaagaaacaaagtccaaaagtcacttttgaatg
tgaacaaaaggaagaaaatcaaggaaagaatgagtctaatatcaagcctgtacagacagt
taatatcactgcaggctttcctgtggttggtcagaaagataagccagttgataatgccaa
atgtagtatcaaaggaggctctaggttttgtctatcatctcagttcagaggcaacgaaac
tggactcattactccaaataaacatggacttttacaaaacccatatcgtataccaccact
ttttcccatcaagtcatttgttaaaactaaatgtaagaaaaatctgctagaggaaaactt
tgaggaacattcaatgtcacctgaaagagaaatgggaaatgagaacattccaagtacagt
gagcacaattagccgtaataacattagagaaaatgtttttaaagaagccagctcaagcaa
tattaatgaagtaggttccagtactaatgaagtgggctccagtattaatgaaataggttc
cagtgatgaaaacattcaagcagaactaggtagaaacagagggccaaaattgaatgctat
gcttagattaggggttttgcaacctgaggtctataaacaaagtcttcctggaagtaattg
taagcatcctgaaataaaaaagcaagaatatgaagaagtagttcagactgttaatacaga
tttctctccatatctgatttcagataacttagaacagcctatgggaagtagtcatgcatc
tcaggtttgttctgagacacctgatgacctgttagatgatggtgaaataaaggaagatac
tagttttgctgaaaatgacattaaggaaagttctgctgtttttagcaaaagcgtccagaa
aggagagcttagcaggagtcctagccctttcacccatacacatttggctcagggttaccg
aagaggggccaagaaattagagtcctcagaagagaacttatctagtgaggatgaagagct
tccctgcttccaacacttgttatttggtaaagtaaacaatataccttctcagtctactag
gcatagcaccgttgctaccgagtgtctgtctaagaacacagaggagaatttattatcatt
gaagaatagcttaaatgactgcagtaaccaggtaatattggcaaaggcatctcaggaaca
tcaccttagtgaggaaacaaaatgttctgctagcttgttttcttcacagtgcagtgaatt
ggaagacttgactgcaaatacaaacacccaggatcctttcttgattggttcttccaaaca
aatgaggcatcagtctgaaagccagggagttggtctgagtgacaaggaattggtttcaga
tgatgaagaaagaggaacgggcttggaagaaaataatcaagaagagcaaagcatggattc
aaacttaggtgaagcagcatctgggtgtgagagtgaaacaagcgtctctgaagactgctc
agggctatcctctcagagtgacattttaaccactcagcagagggataccatgcaacataa
cctgataaagctccagcaggaaatggctgaactagaagctgtgttagaacagcatgggag
ccagccttctaacagctacccttccatcataagtgactcttctgcccttgaggacctgcg
aaatccagaacaaagcacatcagaaaaagcagtattaacttcacagaaaagtagtgaata
ccctataagccagaatccagaaggcctttctgctgacaagtttgaggtgtctgcagatag
ttctaccagtaaaaataaagaaccaggagtggaaaggtcatccccttctaaatgcccatc
attagatgataggtggtacatgcacagttgctctgggagtcttcagaatagaaactaccc
atctcaagaggagctcattaaggttgttgatgtggaggagcaacagctggaagagtctgg
gccacacgatttgacggaaacatcttacttgccaaggcaagatctagagggaacccctta
cctggaatctggaatcagcctcttctctgatgaccctgaatctgatccttctgaagacag
agccccagagtcagctcgtgttggcaacataccatcttcaacctctgcattgaaagttcc
ccaattgaaagttgcagaatctgcccagagtccagctgctgctcatactactgatactgc
tgggtataatgcaatggaagaaagtgtgagcagggagaagccagaattgacagcttcaac
agaaagggtcaacaaaagaatgtccatggtggtgtctggcctgaccccagaagaatttat
gctcgtgtacaagtttgccagaaaacaccacatcactttaactaatctaattactgaaga
gactactcatgttgttatgaaaacagatgctgagtttgtgtgtgaacggacactgaaata
ttttctaggaattgcgggaggaaaatgggtagttagctatttctgggtgacccagtctat
taaagaaagaaaaatgctgaatgagcatgattttgaagtcagaggagatgtggtcaatgg
aagaaaccaccaaggtccaaagcgagcaagagaatcccaggacagaaagatcttcagggg
gctagaaatctgttgctatgggcccttcaccaacatgcccacagatcaactggaatggat
ggtacagctgtgtggtgcttctgtggtgaaggagctttcatcattcacccttggcacagg
tgtccacccaattgtggttgtgcagccagatgcctggacagaggacaatggcttccatgc
aattgggcagatgtgtgaggcacctgtggtgacccgagagtgggtgttggacagtgtagc
actctaccagtgccaggagctggacacctacctgataccccagatcccccacagccacta
ctgactgcagccagccacaggtacagagccacaggaccccaagaatgagcttacaaagtg
gcctttccaggccctgggagctcctctcactcttcagtccttctactgtcctggctacta
aatattttatgtacatcagcctgaaaaggacttctggctatgcaagggtcccttaaagat
tttctgcttgaagtctcccttggaaatctgccatgagcacaaaattatggtaatttttca
cctgagaagattttaaaaccatttaaacgccaccaattgagcaagatgctgattcattat
ttatcagccctattctttctattcaggctgttgttggcttagggctggaagcacagagtg
gcttggcctcaagagaatagctggtttccctaagtttacttctctaaaaccctgtgttca
caaaggcagagagtcagacccttcaatggaaggagagtgcttgggatcgattatgtgact
taaagtcagaatagtccttgggcagttctcaaatgttggagtggaacattggggaggaaa
ttctgaggcaggtattagaaatgaaaaggaaacttgaaacctgggcatggtggctcacgc
ctgtaatcccagcactttgggaggccaaggtgggcagatcactggaggtcaggagttcga
aaccagcctggccaacatggtgaaaccccatctctactaaaaatacagaaattagccggt
catggtggtggacacctgtaatcccagctactcaggtggctaaggcaggagaatcacttc
agcccgggaggtggaggttgcagtgagccaagatcataccacggcactccagcctgggtg
acagtgagactgtggctcaaaaaaaaaaaaaaaaaaaggaaaatgaaactagaagagatt
tctaaaagtctgagatatatttgctagatttctaaagaatgtgttctaaaacagcagaag
attttcaagaaccggtttccaaagacagtcttctaattcctcattagtaataagtaaaat
gtttattgttgtagctctggtatataatccattcctcttaaaatataagacctctggcat
gaatatttcatatctataaaatgacagatcccaccaggaaggaagctgttgctttctttg
aggtgatttttttcctttgctccctgttgctgaaaccatacagcttcataaataattttg
cttgctgaaggaagaaaaagtgtttttcataaacccattatccaggactgtttatagctg
ttggaaggactaggtcttccctagcccccccagtgtgcaagggcagtgaagacttgattg
tacaaaatacgttttgtaaatgttgtgctgttaacactgcaaataaacttggtagcaaac
acttccaaaaaaaaaaaaaaaaaa

ORFs can begin with:

Search for ORFs in reading frame on the strand.

Only return ORFs that are at least codons long.

Use the genetic code.(Ref:(NCBI, Genetic Codes.)

Sequence Mapping

Sequence Analysis

ORF Finder	Protein GRAVY	Prot Iso Point	Prot Patrn srch	Restriction sites	DNA Mol Wt
DNA Stats	Fuzzy Nuc	Pairwise Prot	DNA Ptrn srch	Mutate Digest	Protein Mol Wt
Protein Stats	Fuzzy Pro	Pairwise DNA	Idntity & Simlari	Restrict Digest	PCR Primer St
Translate DNA	Reverse Trans	Rev. Complnt	CpG Islands	Multi Rev Trans	PCR Product