KodDNA|Eminent Biosciences Products|Pairwise Protein Tool|Anuraj Nayarisseri|The Best Software|

Protein Pairwise Alignment

Format Conversion

EMBL2FASTA

EMBLFeatureExtrct

INPUT ONE OR MULITPLE PROTEIN SEQUENCE OF YOUR INTEREST

>Human BRCA1
MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK
RSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKRLLQS
EPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSSEDTVNKATYCSVGDQELLQITPQ
GTRDEISLDSAKKAACEFSETDVTNTEHHQPSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHA
SSLQHENSSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCER
KEWNKQKLPCSENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD
EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTENLIIGAFVTEP
QIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTEQNGQVMNITNSGHENKTKGD
SIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNIHNSKAPKKNRLRRKSSTRHIHALELVVSRN
LSPPNCTELQIDSCSSSEEIKKKKYNQMPVRHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPEL
KLTNAPGSFTKCSNTSELKEFVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSIS
LVPGTDYGTQESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS
RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVTFECEQKEENQ
GKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRGNETGLITPNKHGLLQNPYRI
PPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIPSTVSTISRNNIRENVFKEASSSNINEVGSS
TNEVGSSINEIGSSDENIQAELGRNRGPKLNAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTV
NTDFSPYLISDNLEQPMGSSHASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSP
SPFTHTHLAQGYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL
LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGSSKQMRHQSES
QGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSEDCSGLSSQSDILTTQQRDTM
QHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPE
GLSADKFEVSADSSTSKNKEPGVERSSPSKCPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLE
ESGPHDLTETSYLPRQDLEGTPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAES
AQSPAAAHTTDTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI
TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPK
RARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNG
FHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPHSHY

Paste sequence two (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.

>Macaca Mulatta BRCA1
MDLSAVRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITK
RSLQESTRFSQLVEELLKIIHAFQLDTGLQFANSYNFAKKENHSPEHLKDEVSIIQSMGYRNRAKRLLQS
EPENPSLQETSLSVPLSNLGIVRTLRTKQQIQPQKKSVYIELGSDSSEDTVNKATYCSVGDQELLQITPQ
GTRDETSLDSAKKAACEFSEKDITNTEHHQSSNNDLNTTEKHATERHPEKYQGSSVSNLHVEPCGTNTHA
SSLQHENSLLLTKDRMNVEKAEFCNKSKQPGLARSQHNRWTGSKETCNDRQTPSTEKKVDLNANALYERK
EWNKQKLPCSENPRDAEDVPWITLNSSIQKVNEWFSRSDELLSSDDSHDGGSESNAKVADVLDVLNEVDE
YSGSSEKIDLLASDPHEPLICKSERVHSSSVESNIKDKIFGKTYRRKANLPNLSHVTENLIIGALVTESQ
IMQERPLTNKLKRKRRTTSGLHPEDFIKKADLAVQKTPEIINQGTNQMEQNGQVMNITNSAHENKTKGDS
IQNEKNPNAIESLEEESAFKTKAEPISSSINNMELELNIHNSKAPKKNRLRRKSSTRHIHALELVVSRNL
SPPNCTELQIDSCSSSEEIKKKNYNQMPVRHSRNLQLMEDKESATGAKKSNKPNEQTSKRHASDTFPELK
LTKVPGSFTNCSNTSELKEFVNPSLSREEKEEKLETVKVSNNAKDPKDLMLSGERVLQTERSVESSSISL
VPDTDYGTQESISLLEVSTLGKAKTERNKCMSQCAAFENPKELIHGCSEDTRNDTEGFKYPLGSEVNHSQ
ETSIEIEESELDTQYLQNTFKVSKRQSFALFSNPGNPEEECATFSAHSRSLKKQSPKVTSECEQKEENQG
KKESNIKPVQTVNITAGFSVVCQKDKPVDNAKCSIKGGSRFCLSSQFRGNETGLITPNKHGLLQNPYHIP
PLFPVKSFVKTKCNKNLLEENSEEHSVSPERAVGNENIIPSTVSTISHNNIRENAFKEASSSNINEVGSS
TNEVGSSINEVGPSDENIQAELGRNRGPKLNAVLRLGLLQPEVCKQSLPISNCKHPEIKKQEHEELVQTV
NTDFSPCLISDNLEQPMGSSHASEVCSETPDDLLDDGEIKEDTSFAANDIKESSAVFSKSIQRGELSRSP
SPFTHTHLAQGYQKEAKKLESSEENLSSEDEELPCFQHLLFGKVSNIPSQTTRHSTVATECLSKNTEENL
LSLKNSLTDCSNQVILAKASQEHHLSEETKCSGSLFSSQCSELEDLTANTNTQDPFLIGSSKRMRHQSES
QGVGLSDKELVSDDEERGTGLEEDNQEEQSVDSNLGEAASGYESETSVSEDCSRLSSQSEILTTQQRDTM
QDNLIKLQQEMAELEAVLEQHGSQPSNSYPSIITDSSALEDLRNPEQSTSEKAVLTSQKSSEYPINQNPE
GLSADKFEVSADSSTSKNKEPGVERSSPSKCQSLEDRWYVHSSSGSLQNGNYPSQEELIKVVDVETQQLE
KSGPHDLMEPSYLPRQDLDGTPYLESGISLFSDDPESDPSEDRAPESAHVGSIPSSTSALKVPQWQVAES
AQSPAAAHNTNTAGYNAMEESVSRENPKLTASTERVNKRMSLVVSGLTPEEFMLVYKFARRYHIALTNLI
SEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPK
RARESPDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGFHPIVVVQPDAWTEDNG
FHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPHSHY

Scoring matrix Value for gaps preceding a sequence

Value for internal gaps Value for gaps following a sequence

Sequence Mapping

Sequence Analysis

ORF Finder	Protein GRAVY	Prot Iso Point	Prot Patrn srch	Restriction sites	DNA Mol Wt
DNA Stats	Fuzzy Nuc	Pairwise Prot	DNA Ptrn srch	Mutate Digest	Protein Mol Wt
Protein Stats	Fuzzy Pro	Pairwise DNA	Idntity & Simlari	Restrict Digest	PCR Primer St
Translate DNA	Reverse Trans	Rev. Complnt	CpG Islands	Multi Rev Trans	PCR Product